...
OR
Is Molgenis another Data FAIR point, similar to BreeDB, in the FAIR ecosystem?
Currently, Molgenis is not FAIR compliant. The goal is to, later, Molgenis automatically generates FAIR Data Points for the datasets submitted to it.
The first step is for us to develop a first FAIR Data Point (none exists now) for the (selected parts of) BreeDB. Then we can try this initial reference implementation with other datasets such as the NanoPub Store. Once we reach a point where the reference implementation of the FAIR Data Point satisfies some quality criteria, we can start the collaboration with the Molgenis team to adjust Molgenis in such a way that it will generate the FAIR Data Points.
- Are nanopublications stored as named RDF graphs only?
Yes. It is a requirement of the model for the graph to have a name. A nanopublication has 4 graphs. See http://nanopub.org/guidelines/working_draft/
- Has anyone of you (besides Mark Wilkinson) understanding of the Data FAIRport Specification (v0.1) document? We would appreciate your input on this to get started. Thanks.
The specification of the FAIR Profiles are not yet in a stable form. So, we should start the work with the assumption that the specification will exist.
Anchor
- We will use the JIRA/Connfluence collaboration tool (Agile Platform) to share project-related documents, use cases, software requirements and specifications. Luiz already created an account for Arnold and Anand (https://dtl-fair.atlassian.net)
- One could translate data from a relational database to RDF graph using one of the mapping languages: R2RML and D2RQ.
- Jesse van Dam (WUR) is also interested in contributing to the FAIR developments.
- Availability of people involved during summer:
- Kees on holidays: July 25 - Aug 9
- Luiz on holidays: July 3 - July 26
- Mark on holidays : Jul 8 - Aug 4
...